Outreachy June 2025 Interns at Bioconductor | R bloggers

Outreachy June 2025 Interns at Bioconductor | R bloggers

Introduction

For a beginner, open source can be one of the best paths to a fulfilling tech career. It not only provides access to source codes, but also connects you to a global community of people with different backgrounds and skills. Together, contributors share ideas, collaborate on projects, and continually improve the software. This collective effort makes open source projects more reliable, innovative, and adaptable, as many perspectives determine their growth. These values ​​strongly align with the mission of the Outreachy internship, which advocates diversity and inclusion and creates opportunities for people from underrepresented groups in technology to meaningfully contribute to open source.

Accessibility

Accessibility is a paid remote internship program with the primary goal of supporting people from groups underrepresented in the technology sector. They help newcomers to the field of free software and open source make their first contributions.

Interns spend three months working remotely with experienced mentors from open source communities, gaining hands-on experience, building real-world skills, and contributing to meaningful projects. They receive guidance, feedback and support from a diverse and welcoming community.

Our travels

Victoria’s experience

Victoria Poromon

Hello, my name is Victoria Poromon and I am a graduate in Microbiology from the University of Port Harcourt, Nigeria. I contributed to the BugSigDB project since March 2024, and you can read about my experience as an Outreachy June2025 intern here.

Over the past few months I have completed individual tasks, collaborated with fellow contributors and my co-intern, participated in peer reviews, written several blog posts, including one I am particularly proud of: the Step-by-step guide to contributing to BugSigDB. More recently, I even took my first step into co-mentoring!

Every encounter and milestone has taught me something new, broadened my perspective and supported my personal and professional growth.

These are the lessons that stuck with me:

  • Take your time: I’ve always believed in not rushing important work, and this project reinforced that mentality. Because it requires careful attention to detail and accuracy, moving too quickly can make it easy to miss what really matters.
  • Collaborate, not compete: It’s normal for others to know things I don’t know, but what’s not acceptable is choosing to remain ignorant. The collaboration has allowed me to both learn from others and share my own knowledge in return.
  • Know when to ask questions: If you’re stuck on a task for hours despite troubleshooting and research, this is the perfect time to ask your mentors for help. By doing this you demonstrate curiosity, you can overcome challenges more efficiently and you can often learn more deeply.
  • Know when to ask for help: I learned from my mentor, Svetlana, that asking for help is a valuable skill. It is not a sign of weakness, but a demonstration of strength, self-awareness and willingness to learn.
  • Always speak kindly: It’s not enough to simply know how to communicate; It is just as important to do this with kindness and consideration for others. As both a contributor and co-mentor, I have come to deeply appreciate this quality. Thoughtful communication not only shows respect, but also helps create a safe and supportive environment.

My journey with the Bioconductor community has been guided every step of the way, from the big things like grading my tasks, learning new skills, and providing guidance on my job applications, to the little details like dotting my i’s and placing my commas correctly. Every day I am reminded why I chose to stay.

By the end of my internship (June 2025 cohort), I have not only strengthened my technical skills, but also gained confidence, built a meaningful network, and laid a solid foundation for my continued involvement in open source. You can find all my contributions here.

I am super grateful to everyone in the Bioconductor community for giving me an opportunity, especially my mentors Svetlana, ChloeAnd Katefor literally holding my hand every step of the way and my brilliant co-intern Anne-Marie Scherp. I have grown tremendously and become a better contributor because I have learned from the very best.

Anne-Marie’s experience

Photo by Anne-Marie Sharp
Anne-Marie Scherp

Hello, I’m Anne-Marie Sharp. I am a biomedical scientist and aspiring bioinformatician. End of 2024 my curiosity made me want to find out more about the Accessibility did an internship for the first time and then went to the Bioconductor project – Microbiome Study Curation (BugSigDB) where I contributed as an intern to the June 2025 Outreachy cohort.

I was completely new to the world of open source and it took extra effort to quickly get acquainted not only with the various online communication platforms, but also with the art, or rather the science, of curating microbiome studies; but my curiosity and passion for science kept me going during the Outreachy contribution phase. I was also excited about the new skills I learned, such as data curation, analysis, and literature research. And I was fascinated by the collaboration within the community. This collaboration also allowed me to learn quickly, as I freely asked questions and received answers from mentors and fellow curators, and often collaborated with other curators, gaining different perspectives and insights into curation.

As an avid learner, I was and still am excited that there is always something new to learn while working on the project. Whether it’s the core science of the microbiome, improving my language skills in R programming, curating itself or even improving my soft skills. Indeed, it only gets better.

My contributions

During the contribution and internship phase I worked on more than 50 problems And study curationsthese concerned:

  • compiling published microbiome studies, primarily related to eye health conditions such as glaucoma, age-related macular degeneration, etc.,
  • finalizing incomplete curations,
  • assessing existing curations, and
  • handling R-related tasks such as updating unit tests and fixing errors in codes.

I also blogged regularly about my experiences: https://annemariesharp.wordpress.com/category/outreachy-blog/

I am particularly proud of the work I have done in compiling microbiome studies on sight-threatening conditions such as glaucoma, age-related macular degeneration, and acute anterior uveitis. Integrating these underrepresented ocular microbiome findings into BugSigDB improves data discoverability, enables structured queries, and improves cross-study reuse. And I plan to continue this great work!

Until now

Worth mentioning is that I am currently a co-mentor for the December 2025 Outreachy cohort! This transition from intern to co-mentor was exciting. I now guide new contributors through the same journey I once took – from understanding GitHub workflows to mastering the intricacies of microbiome study management.

So far, working with experienced mentors has given me insight into how they support and support the community. I am grateful for this opportunity to learn and also give back. I am also grateful to the BugSigDB community and my fellow intern Victoria Poromon who made working together easy and enjoyable, and to all my mentors who made this experience worthwhile for me – Chloe Mirzai, Svetlana Ugarcina Perovic, Chioma Onyido, Kate RasheedAnd Divine Aleru.

Their patience with my endless questions, their thoughtful feedback on my curations, their willingness to share their expertise transformed me from a complete beginner to a confident contributor. As the African proverb says, “It takes a village to raise a child” – their unique input, support and guidance have been truly invaluable.

Upcoming opportunities

One of the core values ​​of open source is Community, as it ensures that projects remain active, relevant and adaptable over time, preventing stagnation. The Bioconductor community is participating in the current Outreachy internship round (December 2025 to March 2026).

If you are inspired by our journey and would like to contribute to the BugSigDB project, through Outreachy or just to share knowledge, please feel free to join the Bioconductor Zulip Canal.

Applications for the next internship round (May 2026 – August 2026) will open in early February 2026, so keep an eye out for announcements here.

© 2025 Bioconductor. The content is published under Creative Commons CC-BY-4.0 license for the text and BSD license with 3 clauses for any code. | R bloggers


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